Nucleolar Localized Proteins

Nucleolar localized proteins available in the database.

O42661

Protein Details
Accession O42661    Localization Confidence Medium Confidence Score 11.2
NoLS Segment(s)
PositionSequenceProtein Nature
81-104IDDSTKPKQKKKEVVRGRGRGRGRBasic
NLS Segment(s)
PositionSequence
86-116KPKQKKKEVVRGRGRGRGRGTRGRGRGASRG
Subcellular Location(s) nucl 12, cyto_nucl 10, mito 9, cyto 6
Family & Domain DBs
InterPro View protein in InterPro  
IPR027141  LSm4/Sm_D1/D3  
IPR010920  LSM_dom_sf  
IPR047575  Sm  
IPR034102  Sm_D1  
IPR001163  Sm_dom_euk/arc  
Gene Ontology GO:0071013  C:catalytic step 2 spliceosome  
GO:0000243  C:commitment complex  
GO:0005829  C:cytosol  
GO:0005634  C:nucleus  
GO:0034715  C:pICln-Sm protein complex  
GO:0071014  C:post-mRNA release spliceosomal complex  
GO:0071011  C:precatalytic spliceosome  
GO:0034719  C:SMN-Sm protein complex  
GO:0097526  C:spliceosomal tri-snRNP complex  
GO:0005685  C:U1 snRNP  
GO:0005686  C:U2 snRNP  
GO:0071004  C:U2-type prespliceosome  
GO:0005687  C:U4 snRNP  
GO:0046540  C:U4/U6 x U5 tri-snRNP complex  
GO:0005682  C:U5 snRNP  
GO:0003729  F:mRNA binding  
GO:0003723  F:RNA binding  
GO:0000395  P:mRNA 5'-splice site recognition  
GO:0000387  P:spliceosomal snRNP assembly  
KEGG spo:SPAC27D7.07c  -  
Pfam View protein in Pfam  
PF01423  LSM  
PROSITE View protein in PROSITE  
PS52002  SM  
CDD cd01724  Sm_D1  
Amino Acid Sequences MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKKKEVVRGRGRGRGRGTRGRGRGASRGF
FASTA Sequence
with NoLS information
AlphaFold Structure
with highlighted NoLS
NoLS Predictions per Residue
Residue Number Score
1 0.26
2 0.21
3 0.18
4 0.17
5 0.15
6 0.13
7 0.14
8 0.13
9 0.12
10 0.1
11 0.1
12 0.1
13 0.1
14 0.1
15 0.08
16 0.09
17 0.09
18 0.08
19 0.09
20 0.07
21 0.07
22 0.11
23 0.12
24 0.12
25 0.13
26 0.14
27 0.14
28 0.14
29 0.16
30 0.18
31 0.21
32 0.23
33 0.26
34 0.28
35 0.3
36 0.3
37 0.33
38 0.29
39 0.26
40 0.26
41 0.22
42 0.19
43 0.17
44 0.18
45 0.14
46 0.12
47 0.11
48 0.1
49 0.11
50 0.11
51 0.12
52 0.11
53 0.1
54 0.15
55 0.16
56 0.15
57 0.14
58 0.14
59 0.15
60 0.14
61 0.14
62 0.09
63 0.08
64 0.07
65 0.07
66 0.07
67 0.06
68 0.06
69 0.06
70 0.09
71 0.15
72 0.23
73 0.27
74 0.34
75 0.43
76 0.52
77 0.62
78 0.7
79 0.75
80 0.78
81 0.84
82 0.88
83 0.89
84 0.85
85 0.84
86 0.77
87 0.73
88 0.7
89 0.69
90 0.66
91 0.67
92 0.68
93 0.69
94 0.71
95 0.71
96 0.69
97 0.64