Nucleolar Localized Proteins

Nucleolar localized proteins available in the database.

P53905

Protein Details
Accession P53905    Localization Confidence Medium Confidence Score 11.4
NoLS Segment(s)
PositionSequenceProtein Nature
1-26MHQQHSKSENKPQQQRKKFEGPKREAHydrophilic
NLS Segment(s)
Subcellular Location(s) nucl 23.5, cyto_nucl 13.5
Family & Domain DBs
InterPro View protein in InterPro  
IPR017132  Lsm7  
IPR044641  Lsm7/SmG-like  
IPR010920  LSM_dom_sf  
IPR047575  Sm  
IPR001163  Sm_dom_euk/arc  
Gene Ontology GO:0071013  C:catalytic step 2 spliceosome  
GO:0005737  C:cytoplasm  
GO:1990726  C:Lsm1-7-Pat1 complex  
GO:0005730  C:nucleolus  
GO:0005634  C:nucleus  
GO:0000932  C:P-body  
GO:0005732  C:sno(s)RNA-containing ribonucleoprotein complex  
GO:0005681  C:spliceosomal complex  
GO:0097526  C:spliceosomal tri-snRNP complex  
GO:0071004  C:U2-type prespliceosome  
GO:0071001  C:U4/U6 snRNP  
GO:0046540  C:U4/U6 x U5 tri-snRNP complex  
GO:0005688  C:U6 snRNP  
GO:0003723  F:RNA binding  
GO:0000290  P:deadenylation-dependent decapping of nuclear-transcribed mRNA  
GO:0030490  P:maturation of SSU-rRNA  
GO:0000398  P:mRNA splicing, via spliceosome  
GO:0000956  P:nuclear-transcribed mRNA catabolic process  
GO:0006364  P:rRNA processing  
GO:0008033  P:tRNA processing  
KEGG sce:YNL147W  -  
Pfam View protein in Pfam  
PF01423  LSM  
PROSITE View protein in PROSITE  
PS52002  SM  
CDD cd01729  LSm7  
Amino Acid Sequences MHQQHSKSENKPQQQRKKFEGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRGTILVSLSSAEGSDVLYMQK
FASTA Sequence
with NoLS information
AlphaFold Structure
with highlighted NoLS
NoLS Predictions per Residue
Residue Number Score
1 0.83
2 0.86
3 0.83
4 0.85
5 0.85
6 0.84
7 0.84
8 0.8
9 0.79
10 0.75
11 0.69
12 0.58
13 0.51
14 0.47
15 0.4
16 0.36
17 0.28
18 0.25
19 0.24
20 0.24
21 0.26
22 0.26
23 0.29
24 0.31
25 0.37
26 0.37
27 0.41
28 0.47
29 0.46
30 0.45
31 0.38
32 0.33
33 0.26
34 0.24
35 0.2
36 0.12
37 0.09
38 0.04
39 0.04
40 0.04
41 0.05
42 0.04
43 0.04
44 0.05
45 0.06
46 0.06
47 0.05
48 0.05
49 0.05
50 0.04
51 0.04
52 0.04
53 0.04
54 0.04
55 0.04
56 0.04
57 0.05
58 0.05
59 0.06
60 0.06
61 0.07
62 0.08
63 0.1
64 0.1
65 0.1
66 0.1
67 0.1
68 0.12
69 0.17
70 0.18
71 0.2
72 0.22
73 0.22
74 0.22
75 0.23
76 0.3
77 0.31
78 0.32
79 0.3
80 0.28
81 0.27
82 0.27
83 0.26
84 0.19
85 0.12
86 0.09
87 0.08
88 0.08
89 0.07
90 0.08
91 0.07
92 0.06
93 0.06
94 0.06
95 0.06