Nucleolar Localized Proteins

Nucleolar localized proteins available in the database.

A0A1D8PNP9

Protein Details
Accession A0A1D8PNP9    Localization Confidence Medium Confidence Score 10.4
NoLS Segment(s)
PositionSequenceProtein Nature
1-26MSDERRSRQQQQYRRRTNNSNAPKQEHydrophilic
NLS Segment(s)
Subcellular Location(s) nucl 20.5, cyto_nucl 13, cyto 2.5, mito 2
Family & Domain DBs
InterPro View protein in InterPro  
IPR017132  Lsm7  
IPR044641  Lsm7/SmG-like  
IPR010920  LSM_dom_sf  
IPR047575  Sm  
IPR001163  Sm_dom_euk/arc  
Gene Ontology GO:0071013  C:catalytic step 2 spliceosome  
GO:1990726  C:Lsm1-7-Pat1 complex  
GO:0005730  C:nucleolus  
GO:0000932  C:P-body  
GO:0005732  C:sno(s)RNA-containing ribonucleoprotein complex  
GO:0097526  C:spliceosomal tri-snRNP complex  
GO:0071004  C:U2-type prespliceosome  
GO:0046540  C:U4/U6 x U5 tri-snRNP complex  
GO:0005682  C:U5 snRNP  
GO:0005688  C:U6 snRNP  
GO:0008266  F:poly(U) RNA binding  
GO:0030620  F:U2 snRNA binding  
GO:0000290  P:deadenylation-dependent decapping of nuclear-transcribed mRNA  
GO:0030490  P:maturation of SSU-rRNA  
GO:0000398  P:mRNA splicing, via spliceosome  
GO:0008033  P:tRNA processing  
KEGG cal:CAALFM_C503400CA  -  
Pfam View protein in Pfam  
PF01423  LSM  
PROSITE View protein in PROSITE  
PS52002  SM  
CDD cd01729  LSm7  
Amino Acid Sequences MSDERRSRQQQQYRRRTNNSNAPKQEGPKREAILDLNKYKDQKIRVKFIGGREVVGILKGFDQLMNLVLENVTETLRDPEDDETLTDKTRDLGLVVVRCTSLLTISPVDGSEIIDNPFIQPEQ
FASTA Sequence
with NoLS information
AlphaFold Structure
with highlighted NoLS
NoLS Predictions per Residue
Residue Number Score
1 0.88
2 0.87
3 0.85
4 0.84
5 0.85
6 0.85
7 0.84
8 0.77
9 0.74
10 0.71
11 0.68
12 0.68
13 0.63
14 0.56
15 0.52
16 0.49
17 0.43
18 0.41
19 0.38
20 0.37
21 0.38
22 0.38
23 0.35
24 0.37
25 0.37
26 0.38
27 0.38
28 0.38
29 0.4
30 0.42
31 0.46
32 0.44
33 0.49
34 0.49
35 0.48
36 0.49
37 0.4
38 0.35
39 0.27
40 0.26
41 0.2
42 0.17
43 0.14
44 0.06
45 0.06
46 0.06
47 0.05
48 0.04
49 0.05
50 0.04
51 0.06
52 0.05
53 0.05
54 0.05
55 0.05
56 0.05
57 0.05
58 0.05
59 0.04
60 0.04
61 0.05
62 0.07
63 0.07
64 0.08
65 0.09
66 0.09
67 0.11
68 0.11
69 0.11
70 0.12
71 0.13
72 0.14
73 0.13
74 0.12
75 0.11
76 0.12
77 0.11
78 0.09
79 0.1
80 0.14
81 0.16
82 0.17
83 0.16
84 0.15
85 0.15
86 0.15
87 0.13
88 0.09
89 0.08
90 0.11
91 0.11
92 0.11
93 0.12
94 0.12
95 0.13
96 0.12
97 0.12
98 0.11
99 0.12
100 0.13
101 0.14
102 0.14
103 0.13